FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490092
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT17470.3564636843694653No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG16200.33055018241473033No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12020.24526007361883073No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA11910.24301559707157025No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC11310.23077299772287652No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10940.22322339479118208No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG10090.20587971238053265No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG9430.19241285309696954No Hit
CAGCAGCAGCGCCAGGGCGGTTTCGCCGCCACCGGAAGCCA8990.1834349469079275No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA8920.1820066436505799No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8240.16813169772206035No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACAC7910.1613982680802788No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG7840.15996996482293122No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7660.1562971850183231No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAG7540.15384866514858436No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6430.13119985635350095No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCAC6400.1305877263860663No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGAC6240.12732303322641464No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6110.12467047003419766No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC6040.12324216677685007No Hit
GCGTTGAATCGGTGCGCGCAGGGTGAACGGGTGGTTTTCTT5960.12160982019702422No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5940.12120173355206777No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5190.10589848436620064No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5190.10589848436620064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)