FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490092
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG26090.5323490283456984No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC17810.3634011573337251No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC17160.3501383413726402No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG12130.2475045501660913No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA11590.23648621075226692No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC10620.21669400847187875No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9890.20179884593096806No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC9740.19873819609379462No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC9170.1871077267125356No Hit
GGTTTCTACGCAGAAGGTTCTCGTGGCGGTTCT8970.18302686026297105No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC8550.17445704071888543No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGCGT8310.16956000097940793No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8220.1677236110771039No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG7950.16221444137019173No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7870.1605820947903659No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCATC7750.15813357492062716No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC7140.1456869322494552No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT6880.14038180586502125No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA6560.13385241954571794No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCGGT6550.13364837622323972No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6500.1326281596108486No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6470.13201602964341388No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6130.1250785566791541No Hit
ACCCTGAACGGCGACGACCGTCACAAAATCGTC6070.12385429674428475No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT6000.12242599348693715No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACCCA5960.12160982019702422No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5370.10957126417080874No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG5370.10957126417080874No Hit
AACGGCACCCGTGCATCTTCCAGCAGCTCTTCC5200.10610252768867887No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5080.10365400781894012No Hit
GAACTGACCAGCGGCGGCGGTGAAACCCCGACT5050.10304187785150543No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC4980.10161357459415783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)