FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458039
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC16790.3665626726108475No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14900.3252998107148081No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC14050.30674243896262104No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG11610.2534718659328136No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10350.22596329133545398No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9200.20085625896484796No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT9000.19648981855256864No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8210.17924237892406542No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7750.16919956597582303No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGC6790.14824065199688236No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6340.13841616106925395No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6140.13404972065697462No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5820.12706341599732773No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5100.11134423051312224No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4930.10763275616268483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)