FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458039
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT32680.7134763633664382No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21740.4746320728147603No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19960.43577075314547453No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14820.32355323454989643No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC14590.3185318280757752No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13100.2860018470042944No Hit
ATGTCCAACATGGACATCGATGGTATTAACACC11730.25609173018018117No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG8970.19583485249072677No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7720.16854459991398113No Hit
GAACGTACCACTGACGGTAAACTGGATCCGCGT7360.1606850071718784No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5970.1303382463065372No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5360.11702060304908533No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5110.1115625525337362No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG4700.10261134968856363No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT4660.10173806160610778No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4640.10130141756487984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)