FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542005
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13650.25184269517808877No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT13110.24187968745675775No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10200.18819014584736302No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10150.187267645132425No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9300.17158513297847808No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8660.15977712382727097No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGAC8170.15073661682087805No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7430.13708360623979485No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC7390.1363456056678444No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT6500.11992509294194702No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG6210.11457458879530631No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTG6060.11180708665049215No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5980.11033108550659128No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5860.10811708379073993No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)