FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542005
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25100.46309535889890313No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG23420.4320993348769845No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16930.3123587420780251No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG13230.24409368917260912No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11570.2134666654366657No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10370.19132664827815243No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8950.16512762797391167No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGGGT8550.15774762225440725No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC7360.13579210523888155No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7310.1348696045239435No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6320.11660409036817003No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6170.11383658822335586No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT5940.10959308493464083No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGGGC5880.10848608407671516No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGCCG5720.1055340817889134No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5460.10073707807123551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)