FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467347
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23210.49663312271181803No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6440.13779910858526961No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5670.1213231282109439No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGATC5270.11276417736713834No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5030.10762880686085499No Hit
GAACCGATCTACGCTACCATCGACGACCTGGGT4720.10099561995690567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)