FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450784
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16370.3631450983175978No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG15410.3418488677504082No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA15380.3411833605451835No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15100.33497195996308654No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT14170.3143412366011216No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC12140.2693085823809186No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT11520.25555476680627526No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT10910.2420227869667069No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10530.23359302903386098No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT10230.22693795698161423No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10030.22250124228011642No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA9790.21717718463831903No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9060.20098317597785192No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG8390.18612018172783418No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7880.1748065592390147No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7540.16726414424646838No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG7530.16704230851139348No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7400.1641584439554199No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6540.1450805707389792No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6530.1448587350039043No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT6470.14352772059345495No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGC6280.139312841627032No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTT6260.13886917015688224No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6140.13620714133598355No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6060.1344324554553844No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG5890.13066124795911124No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5860.12999574075388656No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5850.12977390501881167No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTG5510.12223149002626535No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5500.12200965429119046No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA5420.12023496841059134No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5390.11956946120536664No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5330.1182384467949173No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5160.11446723929864414No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGAC4820.10692482430609782No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT4800.10648115283594804No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4620.10248810960459998No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)