FastQCFastQC Report
Sun 21 May 2023
EGAF00007942482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450784
Sequences flagged as poor quality0
Sequence length33
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT28740.6375559026052389No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20290.4501047064669554No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT19760.43834741250798603No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16060.35626819053027614No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG15360.3407396890750337No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG14880.3300915737914389No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12760.2830623979555619No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT12190.27041776105629306No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11860.2630971817988216No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11630.25799495989209914No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11400.2528927379853766No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT11280.2502307091644779No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT10260.22760346418683894No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT10180.2258287783062398No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC9900.21961737772414283No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8410.18656385319798394No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT8060.17879960247036275No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8020.17791225953006318No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC7990.1772467523248385No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7640.16948250159721728No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT7400.1641584439554199No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7320.16238375807482075No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6810.15107013558600127No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACCGT6710.14885177823525236No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG6570.14574607794420388No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCGAA6550.1453024064740541No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC6370.14130936324270604No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG6320.14020018456733158No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6170.1368726485412082No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5810.1288865620785121No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5620.12467168311208916No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5410.12001313267551643No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5140.11402356782849435No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCAGC5110.11335806062326968No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5070.11247071768297012No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5020.11136153900759567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)