FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482582
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15750.32636940457787483No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13870.2874122946981031No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10100.20929085626898639No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG9510.19706495476416444No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8120.16826155969348214No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7600.15748618887567292No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7010.14526028737085098No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6940.1438097566838382No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6850.1419447886576789No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6320.13096219917029644No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG6150.12743948178755113No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5070.10505986547363971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)