FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493202
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10480.21248900045011984No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9340.18937473895077472No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9170.18592787539385486No Hit
AGCGTCCGGGTTGCAGGACGCCAGCCAGTCAGCATCCTGTA8830.17903414828001507No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8270.16767977421016134No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6720.13625248883824478No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG6170.12510087144820986No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5940.12043746781237707No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5530.11212444393980558No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5380.10908309374252334No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG4950.10036455651031423No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)