FastQCFastQC Report
Wed 31 May 2023
EGAF00007942486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493202
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22780.46187971662726435No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT20830.42234216406259506No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8950.18146722843784088No Hit
CTGATCACTCCGACCGCAGATGGTCAGACCCGC8830.17903414828001507No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8650.17538452804327637No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7990.1620025871752345No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7800.15815021025867695No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7620.15450059002193828No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7340.1488234029870114No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7110.14415999935117862No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6320.12814222164549213No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5660.11476028077745022No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5380.10908309374252334No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5110.10360866338741528No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5020.10178385326904596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)