FastQCFastQC Report
Wed 31 May 2023
EGAF00007942487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481366
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC33920.704661317999194No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC30510.6338212503583551No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT21950.45599398378780387No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16140.33529580402438064No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG15570.3234545023952668No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG15490.321792565324514No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG15410.3201306282537612No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA15400.3199228861199171No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA15090.3134828799707499No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG13630.283152528429511No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGC10050.2087808445133225No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9300.19320018447501486No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG8420.1749188766967339No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7530.1564298267846088No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6780.14084916674630116No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC6220.12921560725103143No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6090.12651495951105812No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC5820.12090592189726734No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5620.11675107922038531No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTG5490.114050431480412No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5370.11155752587428276No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5350.11114204160659458No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5340.11093429947275048No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA5180.10761042533124483No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5130.10657171466202432No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTC5090.10574074612664792No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGG5000.10387106692205099No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG4860.10096267704823357No Hit
TGCCAGTTCTTTACGACAACCGCCGTCGTGACGTTTGTCCA4820.10013170851285716No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)