FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481366
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT68481.4226181325644105No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG36670.761790404806322No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC33430.694481953440833No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT29050.6034908988171164No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC16440.34152806803970365No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG15490.321792565324514No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA14890.3093280372938679No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCGAA10270.21335117145789276No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9030.1875911468612241No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC8680.18032017217668053No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7540.1566375689184529No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7350.15269046837541494No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6920.14375755662011858No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA6800.14126465101398936No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6470.13440916059713398No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6400.13295496566022527No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG6000.12464528030646119No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5960.12381431177108479No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5800.12049043762957916No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5680.11799753202344992No Hit
AACTACCCGCGTGATTCTAAAACCATTATCAAA5600.11633559495269712No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5590.11612785281885302No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACATT5510.1144659157481002No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5490.114050431480412No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5480.1138426893465679No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5440.11301172081119149No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC4990.10366332478820689No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4950.10283235625283048No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC4820.10013170851285716No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)