FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475947
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC11650.24477515353600296No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9180.1928786188378118No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG8710.1830035697252005No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7880.16556465320718483No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7620.16010186008105945No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT7270.15274810010358297No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6130.12879585331980242No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6040.12690488646845133No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5990.12585434932881182No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5260.11051650709007516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)