FastQCFastQC Report
Sun 21 May 2023
EGAF00007942490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475947
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22730.4775741836801156No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT15140.3181026458828399No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11580.24330440154050767No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC11450.24057300497744497No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC8830.1855248588603353No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8080.16976680176574283No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG7210.15148745553601556No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6550.1376203652927742No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6160.12942617560358613No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5960.12522402704502814No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5210.10946596995043566No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5160.10841543281079616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)