FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446459
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12340.2763971607695219No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10050.22510465686658795No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7210.16149299263762182No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7070.15835720637281364No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6340.14200632084917092No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6010.13461482465355162No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5210.11669604599750481No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5200.11647206126430422No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5030.11266432079989427No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT4890.10952853453508608No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4530.10146508413986503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)