FastQCFastQC Report
Wed 31 May 2023
EGAF00007942493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461098
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11430.24788656641321366No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTAC5880.12752169820732254No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5840.12665420366169447No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTAC5430.11776238456900703No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)