FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517289
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG30230.5843928635636946No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24800.4794225278326042No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC12390.23951794838088575No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12200.23584495320797463No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11850.2290789094684016No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10730.20742756950176788No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA9620.1859695450705505No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8590.16605804492266413No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT8260.1596786322539238No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG8020.1550390594039309No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7890.15252595744351805No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7760.1500128554831052No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7560.14614654477477773No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG7400.14305349620811578No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT7270.14054039424770293No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG7160.13841392335812283No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6920.13377435050812989No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6860.13261445729563165No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC6610.12778156891022233No Hit
ATGTGCGAAGACACCATCACCTACGAATGTCCG5980.11560269017899084No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5920.11444279696649262No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5910.11424948143107624No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5820.11250964161232889No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5750.11115643286441429No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG5380.1040037580540085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)