FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491351
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG26180.5328166626301768No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA22950.46707954191606404No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG20350.4141642125486668No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT20290.41294308956326536No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC11480.2336415312068155No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG8490.1727889024343087No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG8470.17238186143917483No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA6970.141853786804138No Hit
GTAAGACAGCACCTGGCCCGGATAGATCAGGTTGGCGTTGG6400.13025311844282397No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTT6110.12435102401338351No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5740.11682076560340775No Hit
CACGTTGATACCAGCGCCGCTGTTGCGGGATACGCTCAGGG5600.11397147863747097No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT5520.11234331465693567No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACC5290.10766234321289668No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC4950.10074264629562166No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)