FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491351
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG53101.0806938420803052No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA26010.5293568141715393No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC20100.409076200109494No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT12270.2497196505146016No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10060.2047416205523139No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9000.1831684478102212No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC8230.16749736949756897No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC7290.14836644272627916No Hit
AAAATTTCCGGCAGCCAGGCATCCTCCCACACT6400.13025311844282397No Hit
GCAGTTGCGCCGGAACCAGTAGCACCGGCTCCG6210.12638622898905263No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGACT6180.12577566749635188No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC5800.11804188858880922No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5490.11173275316423492No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5480.11152923266666802No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5390.10969754818856581No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGGTA5320.10827290470559743No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5060.1029813717688577No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5010.10196376928102313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)