FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494590
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAACCGGCAGTGGCGGTTCGGTGGAACGGGATGCGATCA43090.8712266725975051No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT21580.436320993145838No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC19480.3938615823207101No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC15750.3184455811884591No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT12770.25819365535089667No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT11480.23211144584403243No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10160.20542267332538064No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG8020.16215451181786936No Hit
CAGCGCGTCACGCTGTTCCGGCACACGAACTTCGAAAGACT6460.13061323520491722No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6450.13041104753432137No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6260.12656948179300026No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG5150.10412665035686125No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5060.10230696132149861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)