FastQCFastQC Report
Sun 21 May 2023
EGAF00007942500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494590
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCGGTCAGAAAGCCAAATCTAACCCGAAC43750.8845710588568308No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT36280.7335368689217332No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24330.4919226025596959No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC21310.4308619260397501No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15590.3152105784589256No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG13260.2681008512100932No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG13050.26385491012758044No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT12730.2573849046685133No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT12020.24302958005620817No Hit
GCCGATAGCCTGGAGCGTGACCTGGATGCCCCA6810.13768980367577185No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5560.11241634485129096No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5180.10473321336864878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)