FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451296
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21220.4702013755938453No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8570.18989753953059632No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7090.15710309863149685No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT5950.1318425157767851No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA4850.10746826916258952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)