FastQCFastQC Report
Sun 21 May 2023
EGAF00007942505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449539
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT12810.28495859091202325No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11750.26137887925185577No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9090.2022071499914357No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8620.19175199482136143No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTAC8620.19175199482136143No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT8430.18752544273133143No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7650.17017433415120825No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7330.1630559306311577No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7290.16216613019115136No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6990.155492626891104No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6710.14926402381105977No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6200.1379190682009792No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5680.1263516624808971No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5560.12368226116087815No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT4940.10989035434078023No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG4800.10677605280075811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)