FastQCFastQC Report
Wed 31 May 2023
EGAF00007942506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449539
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21770.4842738894734383No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16580.3688222823826186No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16010.3561426261125286No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG13090.29118719399206744No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGCGT9560.2126623051615099No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA9200.20465410120145303No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8900.19798059790140568No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8880.19753569768140253No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8710.19375404581137565No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8220.18285399042129827No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7480.1663926822811814No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7450.16572533195117664No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7030.15638242733111032No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6450.1434803209510187No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5750.12790881325090814No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5120.11389445632080865No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC5060.11255975566079918No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT4940.10989035434078023No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)