FastQCFastQC Report
Sun 21 May 2023
EGAF00007942512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456147
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT29350.643432928420005No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG23470.5145271151624367No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21190.4645432283890939No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT18650.40885942470300146No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15940.34944875226626504No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14690.32204530557035344No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11810.258907764382973No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10710.2347927312905708No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT10270.22514671805360992No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9760.21396611180167796No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT8840.193797175033487No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8650.18963185113570843No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8410.18437038937009342No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8160.1788897000309111No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7580.16617450076400808No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7290.1598169011305566No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC6790.14885552245219194No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6740.14775938458435547No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6720.1473209294372209No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6660.14600556399581713No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5450.1194790275941747No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5080.11136760737218483No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5030.11027146950434838No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT4970.10895610406294462No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC4600.10084468384095478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)