FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475906
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC13130.2758948195652082No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11620.24416586468756435No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10200.21432803957083962No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9880.207604022643127No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9380.19709774619357606No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7730.16242703391005786No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6760.142044857597929No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6310.13258920879333314No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5850.12292343445974627No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4930.10359188579257249No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)