FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475906
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT26880.5648174219278597No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24240.5093442822742307No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG23120.4858102230272365No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC14790.31077565737771745No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13560.2849302173118221No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9420.19793824830954013No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6020.12649556845259358No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5240.11010577719129408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)