FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503641
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14660.2910803528703978No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9830.19517870864365688No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA9140.1814784737541225No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA8380.16638835996275125No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8060.16003462784006864No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGG7590.1507025837848785No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACC6320.12548620942298183No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAG6270.12449343877881268No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA6130.12171368097513904No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG5790.11496284059478874No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC5640.11198452866228127No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)