FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503641
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24430.48506773674105164No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14020.2783728886250325No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT10290.20431219857001315No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC9790.19438449212832157No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT9740.1933917214841524No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC8870.176117512275609No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8430.16738113060692042No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACATT8320.16519703518974826No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT6530.12965584612849232No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGGTA6460.12826596722665548No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6450.12806741309782166No Hit
TCCTACACCAACGGCAAACTGACTATCACCCCG6120.1215151268463052No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5750.11416862407945341No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGGGC5050.10026983506108518No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)