FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475751
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8370.17593236798241096No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7950.1671042204850857No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG7890.16584305655689635No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7590.15953723691594973No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7270.15281102929894No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6630.13935861406492053No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6280.13200182448381612No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6060.12737755674712192No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5720.12023096115404908No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5720.12023096115404908No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG5580.11728824532160731No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5340.11224358960885No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4800.10089311425514606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)