FastQCFastQC Report
Wed 31 May 2023
EGAF00007942518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475751
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT17240.3623744353663996No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11900.2501308457575496No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9430.1982129307137557No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8420.17698333792256876No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG7600.15974743090398127No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7430.15617413310744485No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6900.14503385174177247No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6460.1357853162683841No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6050.12716736275909035No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5880.12359406496255394No Hit
ATGTCCAACATGGACATCGATGGTATTAACACC5620.11812902127373354No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5580.11728824532160731No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5320.1118232016327869No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5240.11014164972853446No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5140.10803970984821892No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5070.10656835193199804No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG4790.10068292026711452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)