FastQCFastQC Report
Sun 21 May 2023
EGAF00007942519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475920
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10630.22335686670028576No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10460.2197848377878635No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8060.16935619431837282No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6830.14351151454025887No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6650.13972936628004706No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6250.13132459236846528No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6130.12880316019499075No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6000.12607160867372666No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5190.10905194150277357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)