FastQCFastQC Report
Sun 21 May 2023
EGAF00007942520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475920
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15000.3151790216843167No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10920.22945032778618255No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8260.1735585812741637No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7550.15864010758110605No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6860.1441418725836275No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6820.14330139519246932No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6790.14267103714910068No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6270.1317448310640444No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5410.11367456715414355No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5320.11178349302403766No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)