FastQCFastQC Report
Wed 31 May 2023
EGAF00007942521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459840
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG5420.1178670842032011No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5190.11286534446764093No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4900.10655880306193459No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT4800.10438413361169101No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)