FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463844
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16080.3466682764032735No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15280.32942109847276235No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG6770.14595424323695036No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5690.12267055303076034No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5330.11490932296203034No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4950.10671691344503755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)