FastQCFastQC Report
Sun 21 May 2023
EGAF00007942529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514059
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11060.21515040102400698No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10690.2079527836298946No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG10150.19744815283848743No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA8800.17118657585996938No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8610.16749050206299276No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7900.1536788578742907No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7440.1447304686816105No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6960.1353930190892485No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTAT6520.12683369029625005No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGC6250.12158137490054642No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG5950.11574546890532021No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5840.11360563670707059No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5740.11166033470866184No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCAC5680.1104931535096166No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)