FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514059
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24940.4851583184031405No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT22990.44722492943417No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18340.35676838650816345No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11480.22332066941732368No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT11320.22020818621986973No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11120.21631758222305222No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10960.21320509902559823No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC10930.21262150842607563No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7270.1414234552843156No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAAAC7140.13889456268638425No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG6390.12430479769831868No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTCAC6350.12352667689895518No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTACC5910.11496734810595671No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)