FastQCFastQC Report
Sun 21 May 2023
EGAF00007942531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466023
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7670.16458415142600258No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7000.15020717861564772No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6840.14677387167586148No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6550.14055100284749894No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6010.1289635919257204No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5930.1272469384558273No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5420.11630327258525866No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4750.1019262997749038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)