FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences632137
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32360.5119143476809616No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28020.4432583443146027No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21280.33663588747375967No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13960.22083820437658291No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12470.197267364511174No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10050.15898452392440246No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9070.14348155542232144No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8880.14047587785559143No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7660.12117626400606199No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6640.1050405212794062No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT6580.1040913599425441No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)