FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences617182
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19920.3227573065967575No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12430.20139926310229397No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12250.19848278141617867No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11430.1851965870683202No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9460.15327731528139188No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9390.1521431279590137No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8080.13091762235450807No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7540.12216817729616222No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)