FastQCFastQC Report
Wed 31 May 2023
EGAF00007942544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences617182
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG90351.4639117796695302No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27670.4483280458600542No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19940.323081360117437No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12560.20350561098671058No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11950.19362197860598657No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9820.15911027865362243No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9030.14631016458678314No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8390.13594045192503995No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6830.11066427731204086No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6470.10483131393981031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)