FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556476
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19980.35904513402195243No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18330.3293942595907101No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14500.26056829045637186No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8000.14376181542420519No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6910.12417426807265722No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6640.11932230680209029No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5970.10728225476031313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)