FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546349
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10450.19126968293160598No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT7200.13178389637392948No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTACCCA6000.10981991364494123No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT5570.10194948650038711No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)