FastQCFastQC Report
Sun 21 May 2023
EGAF00007942552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546349
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29080.5322605147991486No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12400.22696115486621188No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10420.19072058336338127No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG7720.14130162222315773No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACC6480.11860550673653654No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGG5780.10579318347796005No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA5630.10304768563683653No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5580.10213251968979535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)