FastQCFastQC Report
Wed 31 May 2023
EGAF00007942554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569885
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA30900.5422146573431482No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20410.3581424322451021No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15840.277950814638041No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15070.26443931670424736No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12230.21460470094843698No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8310.14581889328548744No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8130.1426603613009642No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7060.12388464339296525No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5950.10440702948840555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)