FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514892
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22470.43640219696557725No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18970.3684267768774811No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18610.3614350193827055No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15630.3035588045648408No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15460.30025714130341896No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12730.24723631363470394No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA10610.20606263060991434No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10420.20237253637656055No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9940.19305019305019305No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9350.1815914793781997No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8850.17188070507990025No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7720.1499343551657435No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG6460.1254632039340289No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6080.11808301546732129No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5870.11400449026203555No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5730.11128547345851168No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5600.10876067214095383No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5480.10643008630936196No Hit
CAGGTCACGCAGACCCACCAGGCGGCAGTTACGTGCTTCGATAC5190.10079783721634829No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5190.10079783721634829No Hit

[OK]Adapter Content

Adapter graph