FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514892
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG84261.6364596847494233No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA43670.8481390272134739No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24500.47582794061667305No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20860.405133503725053No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20100.3903731267916378No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15760.30608360588239863No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14160.2750091281278404No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10760.20897586289940415No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9800.1903311762466692No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9020.17518236834132206No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7850.15245915648330136No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6300.12235575615857305No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5890.1143929212339675No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5890.1143929212339675No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5740.11147968894447768No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5730.11128547345851168No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5700.11070282700061372No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5600.10876067214095383No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5590.10856645665498785No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5430.10545900887953202No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT5330.10351685401987212No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5170.1004094062444163No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)