FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416337
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68561.6467429029848417No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7280.17485834792487817No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7040.1690937870042778No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6530.15684409504800198No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5280.12682034025320835No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4840.11625197856544096No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4240.10184057626394002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)